System - 11.2 - Manual controls

You can directly control the separate firefly modules using the Manual Controls. You may need to do this to reset firefly after stopping a protocol: specific instructions for resetting are shown for the firefly modules you would need to use to do this.

Do not operate firefly using the manual controls unless you have been trained to do so.

A brief overview of these controls is included here for reference.The appearance will be specific to your instrument type e.g. only 3 dispense heads are shown for 3 head instruments, with the other 3 greyed-out. #

If you access the manual controls during protocol execution e.g., after you have stopped firefly to resolve a problem, they will show the current arrangement of labware.

manual loaded deckYou can remove labware and reservoirs as you would normally, but you will need to purge and
unload any syringes or pipette tips that were in use when execution stopped, and you may also
need to reset other modules.

CAUTION: Take care accessing firefly after a protocol has failed to complete; there may be hot surfaces or awkward access. Home the grippers to access the decks and reservoirs.

11.2.1 General

manual general

Control Function
Home all Moves lower deck to left position and upper deck to right position and opens the plate clamps. This also homes the pipette head and dispense head. If you have firefly+, Home All will home the grippers.
Shut down Shut down the firefly instrument
Power up Start the firefly instrument
Reboot
Turns off the power from the boards. This does not power off the embedded PC.

firefly Shutdown does not shut down the ODTC, if fitted, as it has its own power supply

firefly reboot does not reboot the ODTC, if fitted. To reboot it you need to physically switch off the control unit and switch it on again.

11.2.2 Pipette Head

manual pipette head

Manual controls work differently depending on whether you have EZL or ATL tips loaded.

Control Function
Reset Resets all parameters to default and initializes to ready the pipette head to perform a new function.
Stop Cancels the current action of the pipette head.
Pickup Tips Picks up tips from a specified deck location.
Unload Tips Unloads tips to a specified deck location.
Purge Tips Expels remaining liquid from all tips.

EZL tips

Empty loaded tips:

  1. Select a deck location from the dropdown list. Make sure there is a plate in that location, which you can dispense the liquid into.
  2. Select the plate type from the dropdown list.
  3. Select the tip type present on the pipette head from the list.
  4. Click 'Purge tips' to empty them.

Unload tips:

  1. Select the deck location from the drop-down menu that contains the tip stand you will unload tips into.
  2. Click the unload tips button.

Pick up tips:

  1. Select the deck location of the tip set to pick up, from the drop-down menu.
  2. Select the correct tip type from the drop-down menu.
  3. Click the pickup tips button.

ATL tips

Empty loaded tips:

  1. Select a deck location from the dropdown list. Make sure there is a plate in that location, which you can dispense the liquid into.
  2. Select the plate type from the dropdown list.
  3. Select the tip type present on the pipette head from the list.
  4. Click 'Purge tips' to empty them.

Unload tips:

  1. Select the deck location from the drop-down menu that contains an empty tip box. It must be completely empty. The tips will be right-align to the right hand side of the tip box.
  2. Click the unload tips button.
The pickup tips button is not available for ATL tips. 

11.2.3 Dispense Head

Only S1 to S3 are enabled on a 3 head firefly.

manual dispense head

 Purge syringes:
  1. Select the syringes to purge by selecting the syringe locations on the dispense head graphic. The location will turn green when selected.
  2. Ensure reservoirs have been loaded into the reservoir tray. Click the purge button. This will purge all liquid from the syringes into the reservoirs.
Control Function
Get Access Moves dispense head to the front of the firefly and opens syringe clamps to allow user to get access to the dispense head.
Home This performs the remove function on selected syringes and then returns the head to the default location.
Engage To be used with a new syringe. Moves dispense head to just above the reservoirs, then will drive the piston rod down to engage the plunger of the selected syringe.
Purge Expels liquid from the syringes back into the reservoir.
Remove Expels liquid from the syringes back into the reservoir then withdraws the plunger from the syringe. The syringe clamp opens to enable the selected syringe(s) to be removed.
Stop Cancels the current action of the dispense head.

11.2.3.i Syringe clamp

Control Function
Reset Resets syringe clamps to default open position.
Open/Close Controls if the syringe clamps are open or closed.

11.2.4 Process Modules (Genomics instruments only)

11.2.4.i Shaker Module

manual shaker

Control Function
Reset Resets all parameters to default to ready the module to perform a new function.
Home Ensures shaker module is in correct position to receive a plate from the deck.
Open/Close Controls if the plate clamps on the shaker module are open or closed
Start
Starts the shaker module for the specified speed and time set.

11.2.4.ii Reservoir thermal module

manual reservoir thermal

Control Function
Reset Resets all parameters to default to ready the module to perform a new function.
Start/Stop Turns on or off the thermal module so that it can reach target temperature.
Set Sets a temperature that the thermal module will adjust to over time.

11.2.4.ii Plate thermal modules

manual plate thermal

Control Function
Reset Resets all parameters to default to ready the module to perform a new function.
Turn On/Turn Off Turns on or off the thermal module so that it can reach target temperature.
Set
Sets a temperature that the thermal module will adjust to over time.

11.2.5 Deck

The deck functions relate to repositioning labware e.g., to work around a problem during protocol
execution. You can use the grippers to reposition labware, then 'Apply Changes' to update firefly.

manual - deck

Collision validation is not currently supported on the manual control page, so you must be careful when moving items around. firefly will not warn you that labware will collide nor will it stop the head moving. 

11.2.5.i Gripper

Control Function
Reset Moves grippers back to default position within the pipette head casing.
Pick up Picks up specified labware from specified deck location
Set down Puts down labware on specified deck location

11.2.5.ii Plate clamps

Control Function
Reset Resets the plate clamps in case of an error and closes clamps on both decks.
Open Opens the plate clamps on both decks
Close
Closes the plate clamps on both decks

11.2.5.iii Lights

Control Function
On Turn the LED lights on.
Off Turn the lights off.
Reset Reverts the lights to the previously set color.
Color Select the color for the lights.

11.2.6 Manual controls firefly+

If you are using firefly+, use the manual control select icons to switch between the firefly deck controls
and firefly+ shelves and gripper.

manual control plusThe deck controls give you access to the firefly+ gripper and the ODTC. It can be used to run the ODTC without having created a firefly protocol around the Inheco protocol.

manual plus gripper

Gripper

Control Function
Reset Stops the current command, after warning the user that any plate held will be dropped.
Park  
Pick up Picks up specified labware from specified deck or shelf location 
Set down Puts down labware on specified deck or shelf location 

ODTC

If you are viewing the manual controls for a simulated instrument, they will show implausibly high values for the lid, target and current temperatures. This is intentional: to readily differentiate actual and simulated instruments.

manual plus odtc (1)

Control Function
Open Opens the lid
Close Closes the lid
Run Start running the selected protocol. Use the dropdown selector to run only the pre method or main method from a protocol.
Stop Stop running the current method.
Browse Select and open an ODTC protocol
Download Download a copy of the current protocol XML file

You can use the manual controls to run an ODTC protocol in isolation, by using Run. However, you will need to reach into firefly+ to load the plate in the ODTC.

Alternatively, you could create a firefly protocol with the minimum four steps. This way you can load the ODTC without needing to reach into firefly. It is possible to connect to the ODTC directly, using the Device Manager software on the firefly tablet, but only after shutting down firefly software. The connection between firefly and the ODTC will be lost if you connect to the ODTC using Inheco's Device Manager; you will need to use the Reboot function in firefly Manual Controls to reconnect the ODTC to firefly.

SPT Labtech recommends using the firefly manual controls if you want to run an Inheco protocol in isolation.  

Next Article - System - 11.3 - Machine logs